Genetic signatures indicate widespread antibiotic resistance

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TitleGenetic signatures indicate widespread antibiotic resistance and phage infection in microbial communities of the McMurdo Dry Valleys, East AntarcticaAbstractThe McMurdo Dry Valleys of Antarctica support extensive yet cryptic microbial communities but little evidence for `top-down Ìherbivory control. A question therefore arises as to how standing microbial biomass is regulated. Here, we present results from a survey of soil and rock microbial community metagenomes using the GeoChip microarray that demonstrate antibiotic resistance and phage infection are widespread. We interrogated a range of dry valley locations from maritime to extreme inland sites. Antibiotic resistance genes were identified in three categories: beta-lactamases, tetracycline and vanomycin plus a range of transporter genes. Frequency of recovery generally reflected microbial diversity, with greatest abundance among Halobacteria, Proteobacteria and the photosynthetic bacteria (Chlorobi, Chloroflexi and Cyanobacteria). However, no clear differences between locations and soil/rock communities were apparent. Phage signals were also recovered from all locations in soil and rock communities. The Leviviridae, Myoviridae, Podoviridae and Siphoviridae were ubiquitous. The Corticoviridae occurred only in moisture-sufficient hyporheic soils, the Microviridae occurred only in maritime and hyporheic sites and an unidentified group within the order Caudovirales occurred only at dry inland sites. We postulate that widespread antibiotic resistance indicates potential inter-specific interaction and that phage signals indicate possible `bottom-up Ìtrophic regulation in the dry valleys. Copyright 2015, Springer-Verlag Berlin Heidelberg.AcknowledgementsThe authors gratefully acknowledge Roberta Farrell and Craig Cary (University for Waikato) for enabling access to field sites. Logistical support was provided by Antarctica New Zealand and the US Antarctic Program.Funding DetailsAntarctica New Zealand

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1st AuthorWei, S.AuthorWei, S.Higgins, C.Adriaenssens, E.Cowan, D.Pointing, S.Year2015JournalPolar BiologyVolume38Number6Pages919-925DOI10.1007/s00300-015-1649-4URLhttps://www.scopus.com/inward/recor.....f409ce01bbeea689151303f17Keywordsrank5

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TypeArticleCitationWei, S., Higgins, C., Adriaenssens, E., Cowan, D. and Pointing, S. (2015) Genetic signatures indicate widespread antibiotic resistance and phage infection in microbial communities of the McMurdo Dry Valleys, East Antarctica. Polar Biology, 38(6): 919-925 doi:10.1007/s00300-015-1649-4 IdentifierWei2015bRelevancerank5